Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs2260117 chr13:114154874 C/T 3.85E-12 178 24.23 29.57 3.32 KM Plot
PCPG rs2260124 chr13:114154730 G/A 3.85E-12 178 24.23 29.57 3.32 KM Plot
PCPG rs2260159 chr13:114154419 G/A 3.85E-12 178 24.23 29.57 3.32 KM Plot
PCPG rs2260163 chr13:114154208 C/T 1.21E-7 178 24.17 30.33 3.7 KM Plot
PCPG rs2260165 chr13:114153783 T/C 3.85E-12 178 24.23 29.57 3.32 KM Plot
PCPG rs2260215 chr13:114152928 A/G 4.5E-12 177 24.17 29.57 3.32 KM Plot
PCPG rs2260216 chr13:114152919 A/G 4.5E-12 177 24.17 29.57 3.32 KM Plot
PCPG rs2260218 chr13:114152755 C/T 3.6E-12 178 24.1 29.57 3.32 KM Plot
PCPG rs2260250 chr13:114172744 C/T 3.87E-12 178 24.17 29.95 3.32 KM Plot
PCPG rs2260252 chr13:114152517 C/T 4.5E-12 177 24.17 29.57 3.32 KM Plot
PCPG rs2260255 chr13:114173232 A/G 0.000389 178 24.1 29.5 3.7 KM Plot
PCPG rs2260256 chr13:114173236 A/G 0.000389 178 24.1 29.5 3.7 KM Plot
PCPG rs2260289 chr13:114151521 G/T 5.27E-12 176 24.23 29.57 3.32 KM Plot
PCPG rs2260293 chr13:114151360 C/T 5.27E-12 176 24.23 29.57 3.32 KM Plot
PCPG rs2260295 chr13:114151269 T/C 5.27E-12 176 24.23 29.57 3.32 KM Plot